Webinar
FASTQ to Final Report: An Ultra-Fast Workflow for Comprehensive Genomic Profiling
With a single CGP test, we can interrogate hundreds of genes, using less tissue and increasing the probability of detecting actionable findings.
Ankita Das, Head of Product at MIODx, discusses methods for analyzing and interpreting TCR data in the context of biomarker discovery for inflammatory diseases.
Ben Busby showcases best practices for integrating epigenetic data with phenotypic data at scale to conduct powerful research studies.
How Regeneron Genetics Center (RGC) collaborates with 30 institutions to build one of the world’s most comprehensive genetics databases, pairing sequenced exomes with de-identified records of more than 120,000 people to date
Overview of the growing St. Jude Cloud datasharing platform that includes more than 5,000 whole-genome, 5,000 whole-exome and 1,200 RNA-Seq datasets from more than 5,000 pediatric cancer patients and survivors.
The VGP aims to create reference quality genome assemblies of all vertebrate species on earth. Presented in this webinar is Phase I of the project.
Ever wonder which bioinformatics workflow description and management systems you should be using? We assembled a roundtable of experts from bioinformatics workflow frameworks including CWL, WDL, and Nextflow.
Hear from experts from popular variant annotation platforms, OpenCRAVAT and BioProdict, and learn pros and cons of each software platform for certain projects.
Webinar
Machine Learning in Biomedical Research
Learn about leading technologies and real world examples of how machine learning is used in biomedical research including how to accelerate single cell genomic analysis using NVIDIA RAPIDS, and achieve 100x faster clustering and visualization.
DNAnexus Principal Scientist John Didion walks through how to run WDL workflows both locally and on DNAnexus.
DNAnexus Principal Scientist John Didion walks through how to use public Docker containers as part of an application and highlights best platform practices.
Learn the tips and tricks to faster and more cost effective large-scale WGS analysis on the UK Biobank Research Analysis Platform (UKB-RAP). This webinar will cover how to set up reproducible analysis pipelines, what apps & tools you should incorporate and how to build your own custom workflows.
Our panel of research experts review a broad range of multimodal data science approaches that researchers can use to explore the UK Biobank dataset for new discovery. They discuss linking different data types including proteomics, imaging, wearables & genetics and also describe tools powering their analysis and how to access the tools.
Learn how to analyze the new proteomics data on the UK Biobank Research Analysis Platform (UKB-RAP). Bioinformatics expert Alexandra Lee walks attendees through accessing the data and demonstrates a couple of use cases for working with the data.
Learn how oncology research experts are incorporating large-scale datasets like UK Biobank into their research. They discuss their research experience, strategies for working with large-scale datasets, and the importance of cloud computing and global scientific collaboration networks.
Representatives from UK Biobank, Janssen, Biogen, Olink, Weill Cornell Medicine - Qatar & DNAnexus walk ways to access and analyze the proteomics data on the UK Biobank Research Analysis Platform. They discuss the new dataset, the collection and sequencing process and helpful analysis tips to get you started.
Learn how to perform large-scale variant annotation with tools that are easy to run in Jupyter Notebooks. This session covers strategies for implementing these tools and sample code for you to get up and running on your projects.
Learn how to create and run your own target discovery pipeline with GWAS and PheWAS. This webinar shows an end-to-end target discovery pipeline run entirely on UKB RAP that you will be able to replicate for your own research projects on the platform.
Learn how experts in the field are performing multi-modal data analysis on the UK Biobank dataset using the UK Biobank Research Analysis Platform. They discuss strategies for and examples of working with large-scale data & how to efficiently cross reference cohorts of different data types.
Interested in analyzing the extensive imaging data available on the UK Biobank Research Analysis Platform (UKB RAP)? Do you have your own data to analyze and manage? Experts from DNAnexus (UKB RAP), the FSL group at Oxford and MathWorks (makers of MATLAB and Simulink) will walk you through how to access or transfer the data, as well as label and process bulk data.
Learn how to analyze accelerometer and metabolomic data within the UK Biobank Dataset from expert speakers Rosemary Walmsley, Researcher in Reproducible Machine Learning at the University of Oxford, and Dr. Karsten Suhre, Professor of Physiology and Biophysics, Director Bioinformatics Core at Weill Cornell Medicine - Qatar.
The Research Analysis Platform allows users to bring in their own application through executing Docker Images. Join DNAnexus experts as they detail how to package and run your own application with Docker. The session will cover how to use Docker on the command line interface (CLI), commands necessary for importing your registries, and how to run your package via the Platform GUI or CLI.
RStudio Workbench Trial Version is now available on the UK Biobank Research Analysis Platform, allowing users to use RStudio in their analysis. This session covers everything you’ll need to know to start working with the application and use...
Coming from high performance computing? Learn equivalent cloud-based methods for running bioinformatics jobs quickly on the Research Analysis Platform.
Watch the panel of expert cardiovascular disease researchers as they discuss the latest advances in their field of study. They discuss their research experience, recent advances and potential roadblocks
Learn how to create notebooks, dashboards and incorporate Shiny apps all in the cloud on the Research Analysis Platform.
A panel of research experts discuss the landscape of Dementia research, including the Demon Network hackathon, incorporating large-scale datasets, and the importance of cloud computing and global scientific collaboration networks.
Learn about the data formats available to start running your image analysis on the Research Analysis Platform. Ondrej Klempir, Sr. Community Engagement Scientist at DNAnexus, walks you through how to access the data, reviews basic image...
This introductory session covers basic Cloud Computing concepts that will set you up for success on the Research Analysis Platform. Topics discuss include basic cloud computing concepts, selecting instance types, and the basics of running apps on files in your...
This session details visualizing GWAS results using the Research Analysis Platform. The webinar covers interactive exploration of GWAS results using the LocusZoom App and then dives deeper into variant annotation and visualization using both R and...
DNAnexus Experts elaborate on the starter example from our introduction to WDL webinar and add more complexity to our WDL script. Then they introduce more syntax and discuss how to use WDL with the Docker environment.
DNAnexus experts take you through creating a starter WDL script and explain the basics of WDL syntax and how to use it on UKB RAP. They then compare it with native DNAnexus workflows and provide you tips on how to decide when to use WDL.
DNAnexus experts give you an introduction to the applet and workflow development process by building a simple project that works on Bulk files on RAP.
An introduction to running GWAS using Regenie on the Research Analysis Platform. DNAnexus experts demonstrate how to run the analysis using a diabetes phenotype on the 300k data.
An introduction to using the Research Analysis Platform to explore and analyze the uniquely rich UK Biobank dataset
Learn how to run apps, applets, and workflows on the UK Biobank Research Analysis Platform.
Go in-depth analyzing the uniquely rich UK Biobank dataset with Jupyter notebooks. Learn how to utilize Jupyter Notebooks and Apache Spark to explore and analyze UK Biobank’s trove of phenotypic and health record data, covering 500,000 volunteer...
An introduction to using Jupyter Notebooks on the Research Analysis Platform, to explore and analyze the uniquely rich UK Biobank dataset.